Maybe it only shows the indexes in the .cue file, but I don't know too much about that sorry.
I finally found the original post mentioning it:
http://soundtrackcentral.com/forums/...d=41258#p41258
Could be it's just in the N30D-021 release?
(here is the original info by Alcahest, just in case the post implodes or something)
Code:
According to the first print CD "Index" marks (dunno if reprints have the embedded info too)
TITLE "Secret of Mana+"
TRACK 01 AUDIO
TITLE "Secret of Mana"
INDEX 01 00:00:00
INDEX 02 06:43:02
INDEX 03 13:20:70
INDEX 04 18:08:55
INDEX 05 20:25:55
INDEX 06 25:06:57
INDEX 07 26:47:62
INDEX 08 26:55:32
INDEX 09 27:03:00
INDEX 10 32:22:60
INDEX 11 34:09:07
INDEX 12 34:18:15
INDEX 13 40:41:65
INDEX 14 44:34:42
INDEX 15 48:03:17